PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G255000.1
Common NamePHAVU_007G255000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 919aa    MW: 102748 Da    PI: 5.7477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G255000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09856909346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.......TTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg.......kgRtlkqcksrwqk 46 
                         +WT+eE++ l ++v+++G +    Wk I +          k+Rt  ++k++w +
  Phvul.007G255000.1 856 PWTAEEEDMLREGVQKFGFDdprKWKNILAFGShvfekvgKRRTSQDLKDKWKN 909
                         8**************************9987777888888************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-10561615IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.3E-10564615IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.751565614IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-6567612IPR001965Zinc finger, PHD-type
PROSITE patternPS013590568611IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS512949.733849915IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-12850916IPR009057Homeodomain-like
SuperFamilySSF466892.23E-11851912IPR009057Homeodomain-like
SMARTSM007172.2E-8853913IPR001005SANT/Myb domain
CDDcd116601.92E-13855912No hitNo description
PfamPF139211.3E-8857913No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MDGGEDPSAL AWVWVIEALS ACKAISTPML QGLIDSAPVG MDKFGEITKE IVSLRCLEEL  60
PSSVVERVAS STSDSRARFD ISRGCQDVLQ EILNETPLSN LKMTGAELLK SDVYPFINHK  120
RAGNLKCHLE QLRQTILEGT HPHTDYLKER SGLFPRNNGY SVIVNDVKRD DHSAKEVGNS  180
TNTENMVGND ISVSLTLENG NKTSKEHLLD NNSSPSTRSR VYSADDYLTE HFDRKQVCLN  240
ECDDFCRTSK RVKFSASTSF ESKKEKPVSQ LKQEVSEHLT ERILLVSERG DHHVENNNKE  300
TLGGGSSEDI PNKCTVSKLC QPSSHIEVPR DESNTPFNDA LMLQPTFGAE NSKQLQVESI  360
PHVSLADGIL LEISGSKHRS KHEKDLQLKD PNDSQQQIAG VKAPDHTGNG CGVEKSGDIV  420
YQGEKISLEM EKQAEQNLCL KCNESDQLPI SDVNVIQSVV TECCLGMTTT LPTNDAKAEK  480
NQQIINLQQP KQTEPDIAAL NLSQEPVVCD KTIVGAVIGC EAEQSSDSDG YHNEKKCLEA  540
KKHEFLRSHF TVDQDFSAMN ELNKQNLCMK CNQGGQLLAC KTTTCPLMVH EDCLGSSVQL  600
DAEGNFFCPF CAYSRTISEY VEAKEKASLA RKDLTIFISK GKMSQAADNL LYEFRTQEHC  660
FSRKSSECEH IHVKNNKDDQ LTRCEDNRED HVGEHANEAN NLQFGRSEQQ NSSCREKENV  720
SNGSVEILRE EKIGEMRNAK NITGVRVEEN EVPTDHVDGH DVDTCTGEKT NNALVNKSNA  780
GYETPQEMTK QQAIDGATEP VCAHNTGKEE MSEIECDKHS TSSSRYSMRY RKHEMQCKPQ  840
ARPVFQGNQL RRKKIPWTAE EEDMLREGVQ KFGFDDPRKW KNILAFGSHV FEKVGKRRTS  900
QDLKDKWKNM CKAHSKSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145628.10.0hypothetical protein PHAVU_007G255000g
TrEMBLV7BIA40.0V7BIA4_PHAVU; Uncharacterized protein
STRINGGLYMA04G00630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-08TRF-like 6